Web11 rows · Cluster-Buster is our third generation program for finding clusters of pre … Enhancers and silencers of transcription consist of clusters of transcription factor binding sites (1,2). A number of publications have proposed to detect transcription regulatory regions by searching for clusters of the sequence motifs preferentially bound by a set of transcription factors (2–14). It remains to be … See more Cluster-Buster takes two required items of input: a DNA sequence and a selection of motifs, and optionally a small number of parameters may be varied to tune its behavior. The … See more M.F. is a Howard Hughes Medical Institute Predoctoral Fellow. This project was partially funded by NSF grants DBI-0078194 and DBI-0116574 and NIH grant 1P20GM066401-01. See more Cluster-Buster produces an overview diagram indicating the locations of motif clusters with score higher than a user-specified threshold … See more The Cluster-Buster algorithm, in outline, consists of three steps: 1. Perform one pass of the Forward algorithm to obtain the log likelihood score s[i] for each subsequence … See more
Cluster-Buster -- finding dense clusters of motifs in DNA …
http://jvanheld.github.io/cisreg_course/cluster_motifs/cluster_ChIP_seq_peaks.html WebJul 1, 2003 · Cluster-Buster is the third incarnation of the software for finding clusters of pre-specified motifs in DNA sequences that are individually too short and degenerate to … trw keyless entry remote programming
Non-redundant TF motif matches genome-wide - Jeff Vierstra, …
WebJan 25, 2024 · FMSClusterFinder, motifs, blocks, cluster, web application. ... Frith MC, Li M C, Weng Z (2003) Cluster-Buster: Finding dense clusters o f motifs in DNA sequences. Nucleic Acids Res 31:3666-3668 . WebCluster Buster is a tool that finds clusters of pre-specified motifs in DNA sequences. WebJun 16, 2005 · Find clusters of pre-specified motifs in nucleotide sequences. Highlights: The main application is detection of sequences that regulate gene transcription, such as … trw l2252a